Using libxml2. Can someone explain why this point is giving me 8.3V? -- Detecting C compile features - done -- Looking for newlocale - found from /usr/include/libxml2/libxml/xmlmemory.h:218, I wasn't see anyway to override this false positive libxml1 check, so a hack of a workaround you can use is to patch out that branch of the configure script. Making statements based on opinion; back them up with references or personal experience. Connect and share knowledge within a single location that is structured and easy to search. How can I control PNP and NPN transistors together from one pin? By clicking Post Your Answer, you agree to our terms of service, privacy policy and cookie policy. LAPACK: /home/kkarius/anaconda3/lib/R/lib/libRlapack.so, locale: * checking for gzopen in -lz. Alternatively, you may set the environment variables LIBXML_CFLAGS and LIBXML_LIBS to avoid the need to call pkg-config. -- Doxygen not found, API documentation won't be generated Browse other questions tagged, Where developers & technologists share private knowledge with coworkers, Reach developers & technologists worldwide, for libxml++2.6 sudo apt-get install libxml++2.6-dev. privacy statement. This should also work as I didn't have brew: So, you already have libxml2 installed with brew. It only takes a minute to sign up. from /home/patricaholden/williamson/testbuild/Pro3-Linux/packages/libiio/xml.c:23: -- Check for working C compiler: /usr/bin/cc Well occasionally send you account related emails. Why can pkg-config not find gsettings-desktop-schemas? How can I control PNP and NPN transistors together from one pin? On whose turn does the fright from a terror dive end? configure: error: "libxml not found" Making 'packages.html' done What were the most popular text editors for MS-DOS in the 1980s? Located parser file -I/home/kkarius/anaconda3/include/libxml2 -I/home/kkarius/anaconda3/include/parser.h from /usr/include/libxml2/libxml/xmlmemory.h:218, Would you ever say "eat pig" instead of "eat pork"? I am also running into the failure when trying to cross-compile libraries. For trying out wordpress 3.8 installation, i had to upgrade my php installation from 5.1.6 to 5.2.4 or later version. force = TRUE, trying URL 'https://cran.rstudio.com/src/contrib/XML_3.98-1.9.tar.gz' checking for pkg-config /usr/bin/pkg-config Have a question about this project? make: *** [all] Error 2. sorry for going dark on this one, I realized it was probably a problem with cmake or some other component. But i having problem with second command $ ./configure. checking whether gcc accepts -g yes Malicious files should be detected reliably now okay, I missed that I need to have it installed, now it works! -- Performing Test HAS_PIPE2 - Success How to automatically extend windows virtual disk size [Openstack], No such file or directory c++ Error [CentOS], How to configure Open vSwitch bridge for OpenStack, Too many connections for neutron-db-manage [MySQL], How to manually install higher version of PIP for Python v2.7, [CentOS 7]: Yum install python-pip | No package python-pip available, [OpenStack noVNC]: Code 400, message Client must support binary or base64 protocol [Solved], [CentOS Stream 8]: Error: Unknown repo epel [Solved]. https://nick-black.com/bugzilla/show_bug.cgi?id=543 we had a bug on this uninformative error. I'm going to close this - as I think the cross problem is in a new thread. Not the answer you're looking for? Here is the full error message : configuring libxml-libxml-perl (2.0108+dfsg-1ubuntu0.1) . checking whether the C compiler works yes Futuristic/dystopian short story about a man living in a hive society trying to meet his dying mother. https://download.gnome.org/sources/libxml2/2.11/libxml2-2.11.0.tar.xz (2.50M) devtools::install("./XML", During the ./configure it will produce the following error: However I do have libxslt installed, e.g. sudo apt-get install libxml2-dev I'm unable to determine which is the right version (libxml or libxml2) for 14.04 but you'll want to make sure you have the -dev version installed. i.e. [ 26%] Building C object CMakeFiles/iio.dir/scan.c.o thank you so much. Checking for 1.8: /home/***/anaconda3/include/libxml2/ It doesn't mention the names "LIBXML_CFLAGS" and "LIBXML_LIBS" as far as I can see. * Well occasionally send you account related emails. -- Check size of struct usb_functionfs_descs_head_v2 checking how to run the C preprocessor gcc -E headers, it was still possible to declare them manually. What is this brick with a round back and a stud on the side used for? Please check your libxml2 installation. ^ For Microsoft Windows 64-bit Emacs, the file nt/INSTALL.w64 says this: Run msys2_shell.bat in your MSYS2 directory and you will see a BASH window opened. As the error message indicates, you need to specify the libxml2 path using PKG_CONFIG_PATH. It will still work most of the time, but might not suffice when the newer version of btrfs-tools has added new dependencies (like back in the day when mainline btrfs already supported some newer compression algorithm, but Debian's version . Looking for job perks? Make sure it is in your PATH or set the PKG_CONFIG environment variable to the full path to pkg-config. You can check what development packages are available for a particular library using the apt-cache search engine e.g. Don't subscribeAllReplies to my comments I suspect that libusb is also being found in /usr/lib. If you have specified LIBXML_INCDIR, make certain to also How a top-ranked engineering school reimagined CS curriculum (Ep. Can someone explain why this point is giving me 8.3V? USE_XML2 = yes Are there any canonical examples of the Prime Directive being broken that aren't shown on screen? git clone https://github.com/analogdevicesinc/libiio.git * installing *source* package XML https://webkaru.net/linux/configure-error-xml2-config-found-please-check-libxml2-installation/, https://stackoverflow.com/questions/45775877/configure-error-please-reinstall-the-libzip-distribution. Making statements based on opinion; back them up with references or personal experience. Could you please promote your comment as an answer so I can mark it as such? -- Looking for strerror_r of the following names: Add the installation prefix of "Python" to CMAKE_PREFIX_PATH or set no configure: error: "libxml not found" ERROR: configuration failed for package 'XML' [ 11%] Building C object CMakeFiles/iio.dir/context.c.o it will tell you the full paths to all the files in that package. I started with a fresh copy of the LibIIO repo and re-ran cmake. cmake --sysroot=${PWD}/../../../ubuntu-18.04.2-minimal-armhf-2019-02-16 ../ ), I had this issue with PHP 7.4 build from source on Ubuntu 16.04 which I fixed by using the same way for OSX suggested above + installing dev package for libxml2-dev. By not providing "FindPython.cmake" in CMAKE_MODULE_PATH this project has Ah, so you're using Anaconda's R distribution. [ 23%] Building C object CMakeFiles/iio.dir/utilities.c.o ^ Can I connect multiple USB 2.0 females to a MEAN WELL 5V 10A power supply? If I'm reading this right, the linker cannot find the lib xml2. By clicking Accept all cookies, you agree Stack Exchange can store cookies on your device and disclose information in accordance with our Cookie Policy. By clicking Post Your Answer, you agree to our terms of service, privacy policy and cookie policy. provides a separate development package or SDK, be sure it has been Thanks for contributing an answer to Stack Overflow! checking for xmlParseFile in -lxml no Refactoring has begun on some buffering and encoding code with the goal of Site design / logo 2023 Stack Exchange Inc; user contributions licensed under CC BY-SA. [11] LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C, attached base packages: What differentiates living as mere roommates from living in a marriage-like relationship? Downloaded the latest stable version of php ie, 5.5.7 and started to compile. It seems that R is picking up the libxml2 installation from Anaconda. -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) Warning message: To learn more, see our tips on writing great answers. Working PATH (for me): /usr/local/sbin:/usr/local/bin:/usr/bin:/var/lib/flatpak/exports/bin:/usr/lib/jvm/default/bin:/usr/bin/site_perl:/usr/bin/vendor_perl:/usr/bin/core_perl. R -q --vanilla < When a gnoll vampire assumes its hyena form, do its HP change? Can I connect multiple USB 2.0 females to a MEAN WELL 5V 10A power supply? What is scrcpy OTG mode and how does it work? It is possible though that large pthread library not found; support for threads will be disabled. Because configure it self is autogenerated from configure.ac using autotools, one patches configure.ac and can then run autoreconf. Why in the Sierpiski Triangle is this set being used as the example for the OSC and not a more "natural"? make[1]: *** [CMakeFiles/iio.dir/all] Error 2 * edition of libxml [ 30%] Building C object CMakeFiles/iio.dir/xml.c.o Internal Here are my steps and the results. To my unluck, i ran into following errors: The quick solution to the above problem is you need to install libxml2-devel package. make all, [ 3%] Building C object CMakeFiles/iio.dir/backend.c.o ** package XML successfully unpacked and MD5 sums checked [ 25%] Building C object CMakeFiles/iio.dir/local.c.o BLAS: /home/kkarius/anaconda3/lib/R/lib/libRblas.so CMake Warning at bindings/python/CMakeLists.txt:4 (find_package): What are the advantages of running a power tool on 240 V vs 120 V? [ 42%] Building C object CMakeFiles/iio.dir/xml.c.o Ubuntu and the circle of friends logo are trade marks of Canonical Limited and are used under licence. Start here for a quick overview of the site, Detailed answers to any questions you might have, Discuss the workings and policies of this site. Policy. -- Found Git: /usr/bin/git (found version "2.17.1") long story short: if "/bin" is in your PATH, cmake doesn't work correctly. To subscribe to this RSS feed, copy and paste this URL into your RSS reader. Using Bioconductor 3.5 (BiocInstaller 1.26.1), R 3.4.1 (2017-06-30). Can the game be left in an invalid state if all state-based actions are replaced? cmake --sysroot=${PWD}/../../ubuntu-18.04.2-minimal-armhf-2019-02-16 ../ -- Performing Test HAS_WPEDANTIC What did help was to install libxml through conda using. As you can see, libxml2 is being found in /usr/lib and not in the sysroot defined. DESeq2 . I agree, this works for me. [root@catest php-5.5.7]# yum install libxml2-devel To subscribe to this RSS feed, copy and paste this URL into your RSS reader. Sign up for a free GitHub account to open an issue and contact its maintainers and the community. Thanks for pointing this out as I've kind of been stuck on this for a bit trying to do it from CMake within my project. See the pkg-config man page for more details. to your account, phpenv Sign up for a free GitHub account to open an issue and contact its maintainers and the community. The output is this: > source("https://bioconductor.org/biocLite.R") For a list of important open Stack Exchange network consists of 181 Q&A communities including Stack Overflow, the largest, most trusted online community for developers to learn, share their knowledge, and build their careers. Several cases of quadratic behavior in the XML push parser have been fixed. 565), Improving the copy in the close modal and post notices - 2023 edition, New blog post from our CEO Prashanth: Community is the future of AI, Ubuntu 23.04 (Lunar Lobster) is now released and is no longer off-topic, Announcement: AI-generated content is now permanently banned on Ask Ubuntu, Found 'solutions' to "cannot find -lcrypto" are not working for me, Installation of i386 Deb(Hangul 2008) into AMD64 architecture; dpkg/library error, Testing CUDA in Ubuntu 16.04: /usr/bin/ld: cannot find -lnvcuvid. -- Found BISON: /usr/bin/bison (found version "3.0.4") Package libxml2.0 was not found in the pkg-config search path. English version of Russian proverb "The hedgehogs got pricked, cried, but continued to eat the cactus", How to convert a sequence of integers into a monomial. -- Looking for libusb_get_version - found That will install the build dependencies for the btrfs-tools version in your package repository, rather than for the newer version you're trying to build. Site design / logo 2023 Stack Exchange Inc; user contributions licensed under CC BY-SA. I have checked the pathname for sysroot and it is most certainly correct. -- Looking for pthread_setname_np - found By clicking Accept all cookies, you agree Stack Exchange can store cookies on your device and disclose information in accordance with our Cookie Policy. Thanks for trying omphalos! args = "--configure-args='--with-libxml2'") checking whether gcc accepts -g yes CMakeFiles/iio.dir/build.make:302: recipe for target 'CMakeFiles/iio.dir/xml.c.o' failed Problems install R XML package on CentOS 7, Traffic: 580 users visited in the last hour, https://cran.rstudio.com/src/contrib/XML_3.98-1.9.tar.gz', https://cloud.r-project.org/src/contrib/XML_3.98-1.9.tar.gz, User Agreement and Privacy Easy way of installing it is using yum by issuing the following command on your CentOS/Fedora/RHEL Linux distributions. Trying to install the XML package as follows I get the error configure: error: "libxml not found". from /usr/include/libxml2/libxml/globals.h:18, sequential (one-line) endnotes in plain tex/optex. no checking for xmlParseFile in -lxml2. Find centralized, trusted content and collaborate around the technologies you use most. /usr/local/Cellar/libxml2/2.9.3/lib/pkgconfig and /usr/local/Library/ENV/pkgconfig/. ~. [ 30%] Building C object CMakeFiles/iio.dir/sort.c.o I had libxml2 installed but not libxml2-devel. Thanks for contributing an answer to Ask Ubuntu! -- Looking for stddef.h - found Here is the diff in case someone else has the same problem, what didn't work, but I also tried: building and installing AUR version libxml2-git as well as installing libxml2-2.9.9-2. The quick solution to the above problem is you need to install libxml2-devel package. this is the output if make all after cloning the repo and cmake ./: The text was updated successfully, but these errors were encountered: Well, did you install the development files of libxml2? By clicking Post Your Answer, you agree to our terms of service, privacy policy and cookie policy. Try installing: deb: libxml2-dev (Debian, Ubuntu, etc) rpm: libxml2-devel (Fedora, CentOS, RHEL) csw: libxml2_dev (Solaris) If libxml-2.0 is already installed, check that 'pkg-config' is in your PATH and PKG_CONFIG_PATH contains a libxml-2.0.pc file. compilation terminated. Literature about the category of finitary monads. #include
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